No. words: 1292; after pruning: 1266


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:491)  464  0.20 0.00 0.00  USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1        1   492 (160)  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1   (148)   492     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1   640 
  207    USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1    59 
  215  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1   426 
  251    USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1   103 
  263  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1   378 
  271    USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1   123 
  291  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1   350 
  319    USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1   171 
  447  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1   194 
  451    USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1   303 
  459  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1   182 
  467    USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1   319 
  471  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1   170 
  475    USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1   327 
  491  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1   150 
  499    USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1   351 
  555  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1    86 
  559    USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1   411 
  571  C USDA009_E10_BE444505Ld07P017E01E07R1_072.ab1    70 
  587    USDA009_E04_BE444505Ld07P017E01E07F1_024.ab1   439 
Contig length: old 800, new 800

Contig length: old 800, new 800
New start: 0