No. words: 1317; after pruning: 1291


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:488)  460  0.20 0.00 0.00  USDA009_F04_BE444505Ld08P017E01E07F1_022.ab1        1   489 (154)  C USDA009_F10_BE444505Ld08P017E01E07R1_070.ab1   (185)   489     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA009_F10_BE444505Ld08P017E01E07R1_070.ab1   674 
  241    USDA009_F04_BE444505Ld08P017E01E07F1_022.ab1    56 
  249  C USDA009_F10_BE444505Ld08P017E01E07R1_070.ab1   426 
  269    USDA009_F04_BE444505Ld08P017E01E07F1_022.ab1    84 
  273  C USDA009_F10_BE444505Ld08P017E01E07R1_070.ab1   402 
  285    USDA009_F04_BE444505Ld08P017E01E07F1_022.ab1   100 
  297  C USDA009_F10_BE444505Ld08P017E01E07R1_070.ab1   378 
  301    USDA009_F04_BE444505Ld08P017E01E07F1_022.ab1   116 
  325  C USDA009_F10_BE444505Ld08P017E01E07R1_070.ab1   350 
  333    USDA009_F04_BE444505Ld08P017E01E07F1_022.ab1   148 
  429  C USDA009_F10_BE444505Ld08P017E01E07R1_070.ab1   246 
  433    USDA009_F04_BE444505Ld08P017E01E07F1_022.ab1   248 
Contig length: old 828, new 828

Contig length: old 828, new 828
New start: 0