No. words: 1127; after pruning: 1101


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.8 (1,1:764)  332  0.00 0.00 0.00  USDA009_G04_BE444505Ld09P017E01E07F1_020.ab1        1   351 (0)  C USDA009_G10_BE444505Ld09P017E01E07R1_068.ab1   (11)   765   415 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C USDA009_G10_BE444505Ld09P017E01E07R1_068.ab1   776 
   15    USDA009_G04_BE444505Ld09P017E01E07F1_020.ab1     4 
  223  C USDA009_G10_BE444505Ld09P017E01E07R1_068.ab1   554 
  235    USDA009_G04_BE444505Ld09P017E01E07F1_020.ab1   224 
  239  C USDA009_G10_BE444505Ld09P017E01E07R1_068.ab1   538 
  259    USDA009_G04_BE444505Ld09P017E01E07F1_020.ab1   248 
  267  C USDA009_G10_BE444505Ld09P017E01E07R1_068.ab1   510 
  271    USDA009_G04_BE444505Ld09P017E01E07F1_020.ab1   260 
  275  C USDA009_G10_BE444505Ld09P017E01E07R1_068.ab1   502 
Contig length: old 776, new 776

Contig length: old 776, new 776
New start: 0