No. words: 1323; after pruning: 1297


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:488)  463  0.00 0.00 0.00  USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1        1   489 (193)  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   (152)   489     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   641 
  164    USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1    12 
  168  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   474 
  176    USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1    24 
  180  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   462 
  204    USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1    52 
  216  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   426 
  220    USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1    68 
  236  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   406 
  252    USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1   100 
  264  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   378 
  272    USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1   120 
  292  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   350 
  300    USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1   148 
  324  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   318 
  332    USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1   180 
  444  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   198 
  452    USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1   300 
  492  C USDA009_H10_BE444505Ld10P017E01E07R1_066.ab1   150 
  500    USDA009_H04_BE444505Ld10P017E01E07F1_018.ab1   348 
Contig length: old 834, new 834

Contig length: old 834, new 834
New start: 0