No. words: 1102; after pruning: 1076


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:490)  466  0.00 0.00 0.00  USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1        1   491 (70)  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   (50)   491     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   541 
   78    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1    28 
   82  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   460 
   94    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1    44 
  118  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   424 
  122    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1    72 
  138  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   404 
  150    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1   100 
  166  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   376 
  170    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1   120 
  174  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   368 
  178    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1   128 
  190  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   352 
  202    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1   152 
  238  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   304 
  242    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1   192 
  338  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   204 
  346    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1   296 
  394  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1   148 
  402    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1   352 
  458  C USDA009_A09_BE444505Tu01P017E01E07R1_079.ab1    84 
  462    USDA009_A03_BE444505Tu01P017E01E07F1_031.ab1   412 
Contig length: old 611, new 611

Contig length: old 611, new 611
New start: 0