No. words: 1102; after pruning: 1076


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:490)  460  0.00 0.00 0.20  USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1        1   491 (63)  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1   (58)   490     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1   548 
   82    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1    24 
   86  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1   463 
  102    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1    44 
  126  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1   423 
  142    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1    84 
  146  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1   403 
  158    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1   100 
  174  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1   375 
  178    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1   120 
  182  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1   367 
  186    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1   128 
  198  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1   351 
  210    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1   152 
  362  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1   187 
  366    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1   308 
  398  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1   151 
  410    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1   352 
  450  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1    99 
  470    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1   412 
  482  C USDA009_B09_BE444505Tu02P017E01E07R1_077.ab1    67 
  502    USDA009_B03_BE444505Tu02P017E01E07F1_029.ab1   444 
Contig length: old 611, new 612

Contig length: old 612, new 612
New start: 0