No. words: 1849; after pruning: 1823


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 15.8 (1,1:945)  849  0.00 0.45 0.22  USDA012F_C05_BE445121As01P004E05P004E11F1_043.ab1       39   936 (0)  C USDA012R_C05_BE445121As01P004E05P004E11R1_043.ab1   (4)   909    10 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  430 nodes

 217 str. conn. components

Path
    1    USDA012F_C05_BE445121As01P004E05P004E11F1_043.ab1     1 
  542  C USDA012R_C05_BE445121As01P004E05P004E11R1_043.ab1   405 
Contig length: old 946, new 946

Contig length: old 946, new 946
New start: 0