No. words: 1645; after pruning: 1619


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:955)  672  0.00 0.00 0.00  USDA012F_G05_BE445121Ld01P004E05P004E11F1_035.ab1      148   836 (0)  C USDA012R_G05_BE445121Ld01P004E05P004E11R1_035.ab1   (0)   809   121 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1    USDA012F_G05_BE445121Ld01P004E05P004E11F1_035.ab1     1 
  443  C USDA012R_G05_BE445121Ld01P004E05P004E11R1_035.ab1   514 
Contig length: old 956, new 956

Contig length: old 956, new 956
New start: 0