No. words: 1430; after pruning: 1404


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.6 (1,1:633)  522  5.07 0.00 0.00  USDA012F_C06_BE445121Ld05P004E05P004E11F1_044.ab1        1   631 (67)  C USDA012R_C06_BE445121Ld05P004E05P004E11R1_044.ab1   (98)   634     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA012R_C06_BE445121Ld05P004E05P004E11R1_044.ab1   732 
  725    USDA012F_C06_BE445121Ld05P004E05P004E11F1_044.ab1   627 
Contig length: old 796, new 796

Contig length: old 796, new 796
New start: 0