No. words: 1250; after pruning: 1224


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.0 (1,1:717)  296  7.48 0.00 0.00  USDA012F_D06_BE445121Ld06P004E05P004E11F1_042.ab1        1   401 (0)  C USDA012R_D06_BE445121Ld06P004E05P004E11R1_042.ab1   (131)   718   318 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  116 nodes

 60 str. conn. components

Path
    1  C USDA012R_D06_BE445121Ld06P004E05P004E11R1_042.ab1   849 
  171    USDA012F_D06_BE445121Ld06P004E05P004E11F1_042.ab1    40 
  179  C USDA012R_D06_BE445121Ld06P004E05P004E11R1_042.ab1   671 
Contig length: old 849, new 849

Contig length: old 849, new 849
New start: 0