No. words: 1813; after pruning: 1759


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.4 (1,1:956)  814  0.58 0.12 0.00  USDA012F_A05_BE445121Tu01P004E05P004E11F1_047.ab1       17   871 (0)  C USDA012R_A05_BE445121Tu01P004E05P004E11R1_047.ab1   (0)   942    87 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  412 nodes

 208 str. conn. components

Path
    1    USDA012F_A05_BE445121Tu01P004E05P004E11F1_047.ab1     1 
  413  C USDA012R_A05_BE445121Tu01P004E05P004E11R1_047.ab1   545 
  553    USDA012F_A05_BE445121Tu01P004E05P004E11F1_047.ab1   553 
  577  C USDA012R_A05_BE445121Tu01P004E05P004E11R1_047.ab1   381 
Contig length: old 957, new 957

Contig length: old 957, new 958
New start: 0 
I Change at: 36; seg lengths: entry 1, contig 0