No. words: 1788; after pruning: 1748


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.2 (1,1:960)  789  0.12 0.12 0.12  USDA012F_B05_BE445121Tu02P004E05P004E11F1_045.ab1       24   848 (0)  C USDA012R_B05_BE445121Tu02P004E05P004E11R1_045.ab1   (1)   939   115 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1    USDA012F_B05_BE445121Tu02P004E05P004E11F1_045.ab1     1 
  385  C USDA012R_B05_BE445121Tu02P004E05P004E11R1_045.ab1   578 
Contig length: old 961, new 962

Contig length: old 962, new 963
New start: 0 
I Change at: 41; seg lengths: entry 1, contig 0