No. words: 1193; after pruning: 1167


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.9 (1,1:554)  522  0.00 0.18 0.18  USDA012F_C03_BE445475As01P004B06P004B12F1_027.ab1        5   555 (43)  C USDA012R_C03_BE445475As01P004B06P004B12R1_027.ab1   (44)   551     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C USDA012R_C03_BE445475As01P004B06P004B12R1_027.ab1   595 
  496    USDA012F_C03_BE445475As01P004B06P004B12F1_027.ab1   455 
Contig length: old 638, new 639

Contig length: old 639, new 639
New start: 0