No. words: 1186; after pruning: 1160


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.0 (1,1:542)  515  0.00 0.00 0.18  USDA012F_E03_BE445475At01P004B06P004B12F1_023.ab1        3   543 (43)  C USDA012R_E03_BE445475At01P004B06P004B12R1_023.ab1   (60)   540     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C USDA012R_E03_BE445475At01P004B06P004B12R1_023.ab1   600 
  208    USDA012F_E03_BE445475At01P004B06P004B12F1_023.ab1   150 
  416  C USDA012R_E03_BE445475At01P004B06P004B12R1_023.ab1   185 
  500    USDA012F_E03_BE445475At01P004B06P004B12F1_023.ab1   442 
  528  C USDA012R_E03_BE445475At01P004B06P004B12R1_023.ab1    73 
  564    USDA012F_E03_BE445475At01P004B06P004B12F1_023.ab1   506 
Contig length: old 643, new 644

Contig length: old 644, new 644
New start: 0