No. words: 1457; after pruning: 1431


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:573)  537  0.17 0.35 0.17  USDA012F_A04_BE445475Ld03P004B06P004B12F1_032.ab1        1   574 (143)  C USDA012R_A04_BE445475Ld03P004B06P004B12R1_032.ab1   (165)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA012R_A04_BE445475Ld03P004B06P004B12R1_032.ab1   740 
  335    USDA012F_A04_BE445475Ld03P004B06P004B12F1_032.ab1   168 
  463  C USDA012R_A04_BE445475Ld03P004B06P004B12R1_032.ab1   278 
  631    USDA012F_A04_BE445475Ld03P004B06P004B12F1_032.ab1   464 
Contig length: old 883, new 884

Contig length: old 884, new 884
New start: 0