No. words: 1679; after pruning: 1653


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.2 (1,1:709)  671  0.00 0.28 0.14  USDA012F_C04_BE445475Ld05P004B06P004B12F1_028.ab1        5   710 (139)  C USDA012R_C04_BE445475Ld05P004B06P004B12R1_028.ab1   (123)   707     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  344 nodes

 174 str. conn. components

Path
    1  C USDA012R_C04_BE445475Ld05P004B06P004B12R1_028.ab1   830 
  152    USDA012F_C04_BE445475Ld05P004B06P004B12F1_028.ab1    31 
  184  C USDA012R_C04_BE445475Ld05P004B06P004B12R1_028.ab1   647 
  204    USDA012F_C04_BE445475Ld05P004B06P004B12F1_028.ab1    83 
  216  C USDA012R_C04_BE445475Ld05P004B06P004B12R1_028.ab1   615 
  228    USDA012F_C04_BE445475Ld05P004B06P004B12F1_028.ab1   107 
  400  C USDA012R_C04_BE445475Ld05P004B06P004B12R1_028.ab1   431 
  464    USDA012F_C04_BE445475Ld05P004B06P004B12F1_028.ab1   343 
  676  C USDA012R_C04_BE445475Ld05P004B06P004B12R1_028.ab1   155 
  732    USDA012F_C04_BE445475Ld05P004B06P004B12F1_028.ab1   611 
  736  C USDA012R_C04_BE445475Ld05P004B06P004B12R1_028.ab1    95 
  784    USDA012F_C04_BE445475Ld05P004B06P004B12F1_028.ab1   663 
  788  C USDA012R_C04_BE445475Ld05P004B06P004B12R1_028.ab1    43 
  816    USDA012F_C04_BE445475Ld05P004B06P004B12F1_028.ab1   695 
Contig length: old 969, new 970

Contig length: old 970, new 970
New start: 0