No. words: 1727; after pruning: 1701


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:729)  695  0.00 0.27 0.00  USDA012F_D04_BE445475Ld06P004B06P004B12F1_026.ab1        1   729 (142)  C USDA012R_D04_BE445475Ld06P004B06P004B12R1_026.ab1   (125)   731     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1  C USDA012R_D04_BE445475Ld06P004B06P004B12R1_026.ab1   856 
  148    USDA012F_D04_BE445475Ld06P004B06P004B12F1_026.ab1    21 
  216  C USDA012R_D04_BE445475Ld06P004B06P004B12R1_026.ab1   641 
  224    USDA012F_D04_BE445475Ld06P004B06P004B12F1_026.ab1    97 
  272  C USDA012R_D04_BE445475Ld06P004B06P004B12R1_026.ab1   585 
  296    USDA012F_D04_BE445475Ld06P004B06P004B12F1_026.ab1   169 
  752  C USDA012R_D04_BE445475Ld06P004B06P004B12R1_026.ab1   105 
  756    USDA012F_D04_BE445475Ld06P004B06P004B12F1_026.ab1   629 
  760  C USDA012R_D04_BE445475Ld06P004B06P004B12R1_026.ab1    97 
  804    USDA012F_D04_BE445475Ld06P004B06P004B12F1_026.ab1   677 
  812  C USDA012R_D04_BE445475Ld06P004B06P004B12R1_026.ab1    45 
  840    USDA012F_D04_BE445475Ld06P004B06P004B12F1_026.ab1   713 
Contig length: old 997, new 998

Contig length: old 998, new 998
New start: 0