No. words: 1674; after pruning: 1648


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:702)  663  0.00 0.43 0.14  USDA012F_E04_BE445475Ld07P004B06P004B12F1_024.ab1        1   703 (140)  C USDA012R_E04_BE445475Ld07P004B06P004B12R1_024.ab1   (126)   705     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C USDA012R_E04_BE445475Ld07P004B06P004B12R1_024.ab1   831 
  152    USDA012F_E04_BE445475Ld07P004B06P004B12F1_024.ab1    23 
  156  C USDA012R_E04_BE445475Ld07P004B06P004B12R1_024.ab1   676 
  204    USDA012F_E04_BE445475Ld07P004B06P004B12F1_024.ab1    75 
  216  C USDA012R_E04_BE445475Ld07P004B06P004B12R1_024.ab1   616 
  348    USDA012F_E04_BE445475Ld07P004B06P004B12F1_024.ab1   219 
  400  C USDA012R_E04_BE445475Ld07P004B06P004B12R1_024.ab1   432 
  408    USDA012F_E04_BE445475Ld07P004B06P004B12F1_024.ab1   279 
  684  C USDA012R_E04_BE445475Ld07P004B06P004B12R1_024.ab1   148 
  732    USDA012F_E04_BE445475Ld07P004B06P004B12F1_024.ab1   603 
  744  C USDA012R_E04_BE445475Ld07P004B06P004B12R1_024.ab1    88 
  780    USDA012F_E04_BE445475Ld07P004B06P004B12F1_024.ab1   651 
  788  C USDA012R_E04_BE445475Ld07P004B06P004B12R1_024.ab1    44 
  796    USDA012F_E04_BE445475Ld07P004B06P004B12F1_024.ab1   667 
Contig length: old 971, new 972

Contig length: old 972, new 972
New start: 0