No. words: 1458; after pruning: 1432


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:573)  540  0.00 0.35 0.17  USDA012F_F04_BE445475Ld08P004B06P004B12F1_022.ab1        1   574 (143)  C USDA012R_F04_BE445475Ld08P004B06P004B12R1_022.ab1   (166)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA012R_F04_BE445475Ld08P004B06P004B12R1_022.ab1   741 
  632    USDA012F_F04_BE445475Ld08P004B06P004B12F1_022.ab1   464 
Contig length: old 884, new 885

Contig length: old 885, new 885
New start: 0