No. words: 1459; after pruning: 1433


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:572)  535  0.00 0.52 0.17  USDA012F_H04_BE445475Ld10P004B06P004B12F1_018.ab1        1   573 (142)  C USDA012R_H04_BE445475Ld10P004B06P004B12R1_018.ab1   (169)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA012R_H04_BE445475Ld10P004B06P004B12R1_018.ab1   744 
  195    USDA012F_H04_BE445475Ld10P004B06P004B12F1_018.ab1    23 
  207  C USDA012R_H04_BE445475Ld10P004B06P004B12R1_018.ab1   538 
  275    USDA012F_H04_BE445475Ld10P004B06P004B12F1_018.ab1   103 
  283  C USDA012R_H04_BE445475Ld10P004B06P004B12R1_018.ab1   462 
  343    USDA012F_H04_BE445475Ld10P004B06P004B12F1_018.ab1   171 
  535  C USDA012R_H04_BE445475Ld10P004B06P004B12R1_018.ab1   210 
  567    USDA012F_H04_BE445475Ld10P004B06P004B12F1_018.ab1   395 
Contig length: old 886, new 887

Contig length: old 887, new 887
New start: 0