No. words: 1262; after pruning: 1236


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 9.0 (1,1:586)  548  0.00 0.00 0.52  USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1       12   588 (39)  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   (61)   574     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   635 
   91    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1    42 
   95  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   541 
  107    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1    58 
  119  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   517 
  123    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1    74 
  131  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   505 
  143    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1    94 
  147  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   489 
  151    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1   102 
  155  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   481 
  231    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1   182 
  235  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   401 
  239    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1   190 
  247  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   389 
  259    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1   210 
  263  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   373 
  275    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1   226 
  315  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   321 
  499    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1   450 
  523  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   113 
  527    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1   478 
  535  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1   101 
  543    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1   494 
  559  C USDA034R_H06_BE445475Sn24P035G03P004B061R1_034.ab1    77 
  567    USDA034F_H06_BE445475Sn24P035G03P004B061F1_034.ab1   518 
Contig length: old 675, new 676

Contig length: old 676, new 676
New start: 0