No. words: 1248; after pruning: 1222


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 6.8 (1,1:581)  545  0.00 0.17 0.35  USDA034F_C05_BE445475Ta11P035G03P004B061F1_043.ab1       11   583 (43)  C USDA034R_C05_BE445475Ta11P035G03P004B061R1_043.ab1   (50)   572     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA034R_C05_BE445475Ta11P035G03P004B061R1_043.ab1   622 
   87    USDA034F_C05_BE445475Ta11P035G03P004B061F1_043.ab1    46 
  127  C USDA034R_C05_BE445475Ta11P035G03P004B061R1_043.ab1   496 
  131    USDA034F_C05_BE445475Ta11P035G03P004B061F1_043.ab1    90 
  139  C USDA034R_C05_BE445475Ta11P035G03P004B061R1_043.ab1   484 
  187    USDA034F_C05_BE445475Ta11P035G03P004B061F1_043.ab1   146 
  227  C USDA034R_C05_BE445475Ta11P035G03P004B061R1_043.ab1   396 
  243    USDA034F_C05_BE445475Ta11P035G03P004B061F1_043.ab1   202 
  255  C USDA034R_C05_BE445475Ta11P035G03P004B061R1_043.ab1   368 
  259    USDA034F_C05_BE445475Ta11P035G03P004B061F1_043.ab1   218 
  375  C USDA034R_C05_BE445475Ta11P035G03P004B061R1_043.ab1   248 
  487    USDA034F_C05_BE445475Ta11P035G03P004B061F1_043.ab1   446 
  523  C USDA034R_C05_BE445475Ta11P035G03P004B061R1_043.ab1   100 
  531    USDA034F_C05_BE445475Ta11P035G03P004B061F1_043.ab1   490 
  543  C USDA034R_C05_BE445475Ta11P035G03P004B061R1_043.ab1    80 
  555    USDA034F_C05_BE445475Ta11P035G03P004B061F1_043.ab1   514 
Contig length: old 666, new 667

Contig length: old 667, new 667
New start: 0