No. words: 1247; after pruning: 1221


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   18    0.0 7.9 (1,1:580)  528  0.53 0.00 0.53  USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1       19   583 (43)  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   (59)   562     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
18       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   621 
   63    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1    22 
   67  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   555 
   75    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1    34 
   95  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   527 
  109    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1    68 
  113  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   509 
  133    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1    92 
  141  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   481 
  149    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1   108 
  169  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   453 
  177    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1   136 
  217  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   405 
  225    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1   184 
  253  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   369 
  265    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1   224 
  445  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   177 
  449    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1   408 
  457  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   165 
  461    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1   420 
  481  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   141 
  485    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1   444 
  493  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1   129 
  513    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1   472 
  541  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1    81 
  553    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1   512 
  569  C USDA034R_E05_BE445475Ta13P035G03P004B061R1_039.ab1    53 
  573    USDA034F_E05_BE445475Ta13P035G03P004B061F1_039.ab1   532 
Contig length: old 666, new 667

Contig length: old 667, new 667
New start: 0