No. words: 1272; after pruning: 1246


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 11.0 (1,1:598)  557  0.00 0.34 0.34  USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1        9   599 (42)  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1   (40)   591     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1   631 
   68    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1    36 
   76  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1   556 
   90    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1    57 
  118  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1   514 
  266    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1   233 
  278  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1   354 
  286    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1   253 
  298  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1   334 
  470    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1   437 
  482  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1   150 
  494    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1   461 
  502  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1   130 
  510    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1   477 
  514  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1   118 
  538    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1   505 
  554  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1    78 
  562    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1   529 
  574  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1    58 
  582    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1   549 
  594  C USDA034R_F05_BE445475Ta14P035G03P004B061R1_037.ab1    38 
  602    USDA034F_F05_BE445475Ta14P035G03P004B061F1_037.ab1   569 
Contig length: old 673, new 674

Contig length: old 674, new 674
New start: 0