No. words: 1235; after pruning: 1209


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.6 (1,1:584)  551  0.17 0.17 0.34  USDA034F_G05_BE445475Ta15P035G03P004B061F1_035.ab1        5   586 (29)  C USDA034R_G05_BE445475Ta15P035G03P004B061R1_035.ab1   (39)   581     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA034R_G05_BE445475Ta15P035G03P004B061R1_035.ab1   620 
   77    USDA034F_G05_BE445475Ta15P035G03P004B061F1_035.ab1    41 
   89  C USDA034R_G05_BE445475Ta15P035G03P004B061R1_035.ab1   532 
  125    USDA034F_G05_BE445475Ta15P035G03P004B061F1_035.ab1    89 
  133  C USDA034R_G05_BE445475Ta15P035G03P004B061R1_035.ab1   488 
  181    USDA034F_G05_BE445475Ta15P035G03P004B061F1_035.ab1   145 
  437  C USDA034R_G05_BE445475Ta15P035G03P004B061R1_035.ab1   184 
  473    USDA034F_G05_BE445475Ta15P035G03P004B061F1_035.ab1   437 
Contig length: old 650, new 651

Contig length: old 651, new 651
New start: 0