No. words: 1225; after pruning: 1199


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.0 (1,1:574)  541  0.00 0.00 0.70  USDA034F_H05_BE445475Ta16P035G03P004B061F1_033.ab1        3   577 (39)  C USDA034R_H05_BE445475Ta16P035G03P004B061R1_033.ab1   (38)   571     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA034R_H05_BE445475Ta16P035G03P004B061R1_033.ab1   609 
   76    USDA034F_H05_BE445475Ta16P035G03P004B061F1_033.ab1    41 
   84  C USDA034R_H05_BE445475Ta16P035G03P004B061R1_033.ab1   526 
  140    USDA034F_H05_BE445475Ta16P035G03P004B061F1_033.ab1   105 
  156  C USDA034R_H05_BE445475Ta16P035G03P004B061R1_033.ab1   454 
  184    USDA034F_H05_BE445475Ta16P035G03P004B061F1_033.ab1   149 
  460  C USDA034R_H05_BE445475Ta16P035G03P004B061R1_033.ab1   150 
  476    USDA034F_H05_BE445475Ta16P035G03P004B061F1_033.ab1   441 
Contig length: old 650, new 651

Contig length: old 651, new 651
New start: 0