No. words: 1217; after pruning: 1191


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:565)  544  0.00 0.00 0.35  USDA034F_A06_BE445475Ta17P035G03P004B061F1_048.ab1        1   567 (40)  C USDA034R_A06_BE445475Ta17P035G03P004B061R1_048.ab1   (45)   565     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA034R_A06_BE445475Ta17P035G03P004B061R1_048.ab1   610 
   77    USDA034F_A06_BE445475Ta17P035G03P004B061F1_048.ab1    32 
   85  C USDA034R_A06_BE445475Ta17P035G03P004B061R1_048.ab1   526 
  225    USDA034F_A06_BE445475Ta17P035G03P004B061F1_048.ab1   180 
  369  C USDA034R_A06_BE445475Ta17P035G03P004B061R1_048.ab1   242 
  445    USDA034F_A06_BE445475Ta17P035G03P004B061F1_048.ab1   400 
Contig length: old 651, new 652

Contig length: old 652, new 652
New start: 0