No. words: 1228; after pruning: 1202


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.4 (1,1:576)  551  0.00 0.00 0.35  USDA034F_B06_BE445475Ta18P035G03P004B061F1_046.ab1        3   577 (38)  C USDA034R_B06_BE445475Ta18P035G03P004B061R1_046.ab1   (40)   573     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA034R_B06_BE445475Ta18P035G03P004B061R1_046.ab1   613 
   78    USDA034F_B06_BE445475Ta18P035G03P004B061F1_046.ab1    41 
   94  C USDA034R_B06_BE445475Ta18P035G03P004B061R1_046.ab1   520 
  102    USDA034F_B06_BE445475Ta18P035G03P004B061F1_046.ab1    65 
  150  C USDA034R_B06_BE445475Ta18P035G03P004B061R1_046.ab1   464 
  346    USDA034F_B06_BE445475Ta18P035G03P004B061F1_046.ab1   309 
Contig length: old 651, new 652

Contig length: old 652, new 652
New start: 0