No. words: 1215; after pruning: 1189


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:561)  537  0.00 0.18 0.36  USDA034F_C06_BE445475Ta19P035G03P004B061F1_044.ab1        1   563 (40)  C USDA034R_C06_BE445475Ta19P035G03P004B061R1_044.ab1   (50)   562     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C USDA034R_C06_BE445475Ta19P035G03P004B061R1_044.ab1   612 
   80    USDA034F_C06_BE445475Ta19P035G03P004B061F1_044.ab1    29 
  132  C USDA034R_C06_BE445475Ta19P035G03P004B061R1_044.ab1   481 
  140    USDA034F_C06_BE445475Ta19P035G03P004B061F1_044.ab1    89 
  144  C USDA034R_C06_BE445475Ta19P035G03P004B061R1_044.ab1   469 
  172    USDA034F_C06_BE445475Ta19P035G03P004B061F1_044.ab1   121 
  384  C USDA034R_C06_BE445475Ta19P035G03P004B061R1_044.ab1   229 
  420    USDA034F_C06_BE445475Ta19P035G03P004B061F1_044.ab1   369 
  460  C USDA034R_C06_BE445475Ta19P035G03P004B061R1_044.ab1   153 
  468    USDA034F_C06_BE445475Ta19P035G03P004B061F1_044.ab1   417 
Contig length: old 653, new 654

Contig length: old 654, new 654
New start: 0