No. words: 1225; after pruning: 1199


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.8 (1,1:573)  536  0.00 0.00 0.87  USDA034F_D06_BE445475Ta20P035G03P004B061F1_042.ab1        3   577 (39)  C USDA034R_D06_BE445475Ta20P035G03P004B061R1_042.ab1   (39)   570     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C USDA034R_D06_BE445475Ta20P035G03P004B061R1_042.ab1   609 
   77    USDA034F_D06_BE445475Ta20P035G03P004B061F1_042.ab1    41 
   89  C USDA034R_D06_BE445475Ta20P035G03P004B061R1_042.ab1   521 
   97    USDA034F_D06_BE445475Ta20P035G03P004B061F1_042.ab1    61 
  113  C USDA034R_D06_BE445475Ta20P035G03P004B061R1_042.ab1   497 
  117    USDA034F_D06_BE445475Ta20P035G03P004B061F1_042.ab1    81 
  129  C USDA034R_D06_BE445475Ta20P035G03P004B061R1_042.ab1   481 
  137    USDA034F_D06_BE445475Ta20P035G03P004B061F1_042.ab1   101 
  141  C USDA034R_D06_BE445475Ta20P035G03P004B061R1_042.ab1   469 
  145    USDA034F_D06_BE445475Ta20P035G03P004B061F1_042.ab1   109 
  149  C USDA034R_D06_BE445475Ta20P035G03P004B061R1_042.ab1   461 
  157    USDA034F_D06_BE445475Ta20P035G03P004B061F1_042.ab1   121 
  329  C USDA034R_D06_BE445475Ta20P035G03P004B061R1_042.ab1   281 
  377    USDA034F_D06_BE445475Ta20P035G03P004B061F1_042.ab1   341 
  461  C USDA034R_D06_BE445475Ta20P035G03P004B061R1_042.ab1   149 
  473    USDA034F_D06_BE445475Ta20P035G03P004B061F1_042.ab1   437 
Contig length: old 651, new 652

Contig length: old 652, new 652
New start: 0