No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:561)  537  0.00 0.18 0.36  USDA034F_E06_BE445475Ta21P035G03P004B061F1_040.ab1        1   563 (43)  C USDA034R_E06_BE445475Ta21P035G03P004B061R1_040.ab1   (61)   562     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C USDA034R_E06_BE445475Ta21P035G03P004B061R1_040.ab1   623 
   87    USDA034F_E06_BE445475Ta21P035G03P004B061F1_040.ab1    25 
   91  C USDA034R_E06_BE445475Ta21P035G03P004B061R1_040.ab1   533 
   95    USDA034F_E06_BE445475Ta21P035G03P004B061F1_040.ab1    33 
  107  C USDA034R_E06_BE445475Ta21P035G03P004B061R1_040.ab1   517 
  111    USDA034F_E06_BE445475Ta21P035G03P004B061F1_040.ab1    49 
  123  C USDA034R_E06_BE445475Ta21P035G03P004B061R1_040.ab1   501 
  131    USDA034F_E06_BE445475Ta21P035G03P004B061F1_040.ab1    69 
  139  C USDA034R_E06_BE445475Ta21P035G03P004B061R1_040.ab1   485 
  151    USDA034F_E06_BE445475Ta21P035G03P004B061F1_040.ab1    89 
  167  C USDA034R_E06_BE445475Ta21P035G03P004B061R1_040.ab1   457 
  183    USDA034F_E06_BE445475Ta21P035G03P004B061F1_040.ab1   121 
Contig length: old 667, new 668

Contig length: old 668, new 668
New start: 0