No. words: 1235; after pruning: 1209


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.6 (1,1:586)  561  0.00 0.00 0.34  USDA034F_G06_BE445475Ta23P035G03P004B061F1_036.ab1        3   587 (29)  C USDA034R_G06_BE445475Ta23P035G03P004B061R1_036.ab1   (36)   583     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C USDA034R_G06_BE445475Ta23P035G03P004B061R1_036.ab1   619 
   74    USDA034F_G06_BE445475Ta23P035G03P004B061F1_036.ab1    41 
   82  C USDA034R_G06_BE445475Ta23P035G03P004B061R1_036.ab1   538 
  182    USDA034F_G06_BE445475Ta23P035G03P004B061F1_036.ab1   149 
  242  C USDA034R_G06_BE445475Ta23P035G03P004B061R1_036.ab1   378 
  262    USDA034F_G06_BE445475Ta23P035G03P004B061F1_036.ab1   229 
  378  C USDA034R_G06_BE445475Ta23P035G03P004B061R1_036.ab1   242 
  450    USDA034F_G06_BE445475Ta23P035G03P004B061F1_036.ab1   417 
  458  C USDA034R_G06_BE445475Ta23P035G03P004B061R1_036.ab1   162 
  474    USDA034F_G06_BE445475Ta23P035G03P004B061F1_036.ab1   441 
  526  C USDA034R_G06_BE445475Ta23P035G03P004B061R1_036.ab1    94 
  538    USDA034F_G06_BE445475Ta23P035G03P004B061F1_036.ab1   505 
Contig length: old 648, new 649

Contig length: old 649, new 649
New start: 0