No. words: 1258; after pruning: 1232


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 8.1 (1,1:591)  542  0.17 0.52 0.34  USDA034F_A04_BE445475Td01P035G03P004B061F1_032.ab1       12   593 (35)  C USDA034R_A04_BE445475Td01P035G03P004B061R1_032.ab1   (47)   583     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C USDA034R_A04_BE445475Td01P035G03P004B061R1_032.ab1   630 
  508    USDA034F_A04_BE445475Td01P035G03P004B061F1_032.ab1   469 
  512  C USDA034R_A04_BE445475Td01P035G03P004B061R1_032.ab1   119 
  524    USDA034F_A04_BE445475Td01P035G03P004B061F1_032.ab1   485 
  528  C USDA034R_A04_BE445475Td01P035G03P004B061R1_032.ab1   103 
  536    USDA034F_A04_BE445475Td01P035G03P004B061F1_032.ab1   497 
  548  C USDA034R_A04_BE445475Td01P035G03P004B061R1_032.ab1    83 
  564    USDA034F_A04_BE445475Td01P035G03P004B061F1_032.ab1   525 
Contig length: old 666, new 667

Contig length: old 667, new 667
New start: 0