No. words: 1236; after pruning: 1210


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:573)  543  0.00 0.35 0.35  USDA034F_B04_BE445475Td02P035G03P004B061F1_030.ab1        1   575 (37)  C USDA034R_B04_BE445475Td02P035G03P004B061R1_030.ab1   (49)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA034R_B04_BE445475Td02P035G03P004B061R1_030.ab1   624 
  219    USDA034F_B04_BE445475Td02P035G03P004B061F1_030.ab1   168 
  239  C USDA034R_B04_BE445475Td02P035G03P004B061R1_030.ab1   386 
  383    USDA034F_B04_BE445475Td02P035G03P004B061F1_030.ab1   332 
  391  C USDA034R_B04_BE445475Td02P035G03P004B061R1_030.ab1   234 
  495    USDA034F_B04_BE445475Td02P035G03P004B061F1_030.ab1   444 
  527  C USDA034R_B04_BE445475Td02P035G03P004B061R1_030.ab1    98 
  531    USDA034F_B04_BE445475Td02P035G03P004B061F1_030.ab1   480 
  547  C USDA034R_B04_BE445475Td02P035G03P004B061R1_030.ab1    78 
  555    USDA034F_B04_BE445475Td02P035G03P004B061F1_030.ab1   504 
Contig length: old 662, new 663

Contig length: old 663, new 663
New start: 0