No. words: 1265; after pruning: 1239


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.7 (1,1:584)  542  0.00 0.51 0.51  USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1        3   586 (43)  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   (52)   584     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   636 
   96    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1    44 
  100  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   537 
  112    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1    60 
  128  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   509 
  144    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1    92 
  148  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   489 
  156    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   104 
  164  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   473 
  172    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   120 
  176  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   461 
  192    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   140 
  216  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   421 
  232    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   180 
  244  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   393 
  276    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   224 
  300  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   337 
  308    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   256 
  332  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   305 
  340    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   288 
  344  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   293 
  352    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   300 
  368  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   269 
  384    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   332 
  388  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   249 
  428    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   376 
  436  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1   201 
  504    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   452 
  540  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1    97 
  544    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   492 
  556  C USDA034R_C04_BE445475Td03P035G03P004B061R1_028.ab1    81 
  568    USDA034F_C04_BE445475Td03P035G03P004B061F1_028.ab1   516 
Contig length: old 680, new 681

Contig length: old 681, new 681
New start: 0