No. words: 1243; after pruning: 1217


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.3 (1,1:583)  542  0.00 0.17 0.69  USDA034F_D04_BE445475Td04P035G03P004B061F1_026.ab1        5   585 (38)  C USDA034R_D04_BE445475Td04P035G03P004B061R1_026.ab1   (42)   578     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA034R_D04_BE445475Td04P035G03P004B061R1_026.ab1   620 
   84    USDA034F_D04_BE445475Td04P035G03P004B061F1_026.ab1    47 
  104  C USDA034R_D04_BE445475Td04P035G03P004B061R1_026.ab1   517 
  224    USDA034F_D04_BE445475Td04P035G03P004B061F1_026.ab1   187 
  232  C USDA034R_D04_BE445475Td04P035G03P004B061R1_026.ab1   389 
  256    USDA034F_D04_BE445475Td04P035G03P004B061F1_026.ab1   219 
  264  C USDA034R_D04_BE445475Td04P035G03P004B061R1_026.ab1   357 
  272    USDA034F_D04_BE445475Td04P035G03P004B061F1_026.ab1   235 
  296  C USDA034R_D04_BE445475Td04P035G03P004B061R1_026.ab1   325 
  320    USDA034F_D04_BE445475Td04P035G03P004B061F1_026.ab1   283 
  332  C USDA034R_D04_BE445475Td04P035G03P004B061R1_026.ab1   289 
  488    USDA034F_D04_BE445475Td04P035G03P004B061F1_026.ab1   451 
  524  C USDA034R_D04_BE445475Td04P035G03P004B061R1_026.ab1    97 
  528    USDA034F_D04_BE445475Td04P035G03P004B061F1_026.ab1   491 
  540  C USDA034R_D04_BE445475Td04P035G03P004B061R1_026.ab1    81 
  552    USDA034F_D04_BE445475Td04P035G03P004B061F1_026.ab1   515 
Contig length: old 659, new 660

Contig length: old 660, new 660
New start: 0