No. words: 1086; after pruning: 1060


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.9 (1,1:592)  423  0.00 0.66 0.22  USDA034F_E04_BE445475Td05P035G03P004B061F1_024.ab1        3   454 (0)  C USDA034R_E04_BE445475Td05P035G03P004B061R1_024.ab1   (40)   592   139 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C USDA034R_E04_BE445475Td05P035G03P004B061R1_024.ab1   632 
   98    USDA034F_E04_BE445475Td05P035G03P004B061F1_024.ab1    58 
  122  C USDA034R_E04_BE445475Td05P035G03P004B061R1_024.ab1   511 
  150    USDA034F_E04_BE445475Td05P035G03P004B061F1_024.ab1   110 
  154  C USDA034R_E04_BE445475Td05P035G03P004B061R1_024.ab1   479 
  178    USDA034F_E04_BE445475Td05P035G03P004B061F1_024.ab1   138 
  182  C USDA034R_E04_BE445475Td05P035G03P004B061R1_024.ab1   451 
  190    USDA034F_E04_BE445475Td05P035G03P004B061F1_024.ab1   150 
  194  C USDA034R_E04_BE445475Td05P035G03P004B061R1_024.ab1   439 
  278    USDA034F_E04_BE445475Td05P035G03P004B061F1_024.ab1   238 
  282  C USDA034R_E04_BE445475Td05P035G03P004B061R1_024.ab1   351 
Contig length: old 632, new 632

Contig length: old 632, new 632
New start: 0