No. words: 1266; after pruning: 1240


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.4 (1,1:591)  551  0.00 0.68 0.17  USDA034F_F04_BE445475Td06P035G03P004B061F1_022.ab1        5   592 (43)  C USDA034R_F04_BE445475Td06P035G03P004B061R1_022.ab1   (40)   591     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA034R_F04_BE445475Td06P035G03P004B061R1_022.ab1   631 
  102    USDA034F_F04_BE445475Td06P035G03P004B061F1_022.ab1    62 
  110  C USDA034R_F04_BE445475Td06P035G03P004B061R1_022.ab1   522 
  190    USDA034F_F04_BE445475Td06P035G03P004B061F1_022.ab1   150 
  194  C USDA034R_F04_BE445475Td06P035G03P004B061R1_022.ab1   438 
  290    USDA034F_F04_BE445475Td06P035G03P004B061F1_022.ab1   250 
  294  C USDA034R_F04_BE445475Td06P035G03P004B061R1_022.ab1   338 
  510    USDA034F_F04_BE445475Td06P035G03P004B061F1_022.ab1   470 
  522  C USDA034R_F04_BE445475Td06P035G03P004B061R1_022.ab1   110 
  538    USDA034F_F04_BE445475Td06P035G03P004B061F1_022.ab1   498 
  550  C USDA034R_F04_BE445475Td06P035G03P004B061R1_022.ab1    82 
  562    USDA034F_F04_BE445475Td06P035G03P004B061F1_022.ab1   522 
  574  C USDA034R_F04_BE445475Td06P035G03P004B061R1_022.ab1    58 
  582    USDA034F_F04_BE445475Td06P035G03P004B061F1_022.ab1   542 
Contig length: old 674, new 675

Contig length: old 675, new 675
New start: 0