No. words: 1265; after pruning: 1239


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   17    0.0 7.4 (1,1:594)  542  0.00 0.35 0.52  USDA034F_G04_BE445475Td07P035G03P004B061F1_020.ab1       18   596 (43)  C USDA034R_G04_BE445475Td07P035G03P004B061R1_020.ab1   (48)   578     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
17       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA034R_G04_BE445475Td07P035G03P004B061R1_020.ab1   626 
  506    USDA034F_G04_BE445475Td07P035G03P004B061F1_020.ab1   474 
  510  C USDA034R_G04_BE445475Td07P035G03P004B061R1_020.ab1   117 
  534    USDA034F_G04_BE445475Td07P035G03P004B061F1_020.ab1   502 
  538  C USDA034R_G04_BE445475Td07P035G03P004B061R1_020.ab1    89 
  558    USDA034F_G04_BE445475Td07P035G03P004B061F1_020.ab1   526 
  574  C USDA034R_G04_BE445475Td07P035G03P004B061R1_020.ab1    53 
  582    USDA034F_G04_BE445475Td07P035G03P004B061F1_020.ab1   550 
  586  C USDA034R_G04_BE445475Td07P035G03P004B061R1_020.ab1    41 
  602    USDA034F_G04_BE445475Td07P035G03P004B061F1_020.ab1   570 
Contig length: old 670, new 671

Contig length: old 671, new 671
New start: 0