No. words: 1239; after pruning: 1213


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:569)  535  0.00 0.35 0.52  USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1        1   572 (43)  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   (53)   571     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   624 
   85    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1    30 
   97  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   528 
  101    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1    46 
  121  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   504 
  133    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1    78 
  137  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   488 
  145    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1    90 
  153  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   472 
  173    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   118 
  201  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   424 
  209    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   154 
  217  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   408 
  249    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   194 
  257  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   368 
  265    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   210 
  337  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   288 
  349    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   294 
  357  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   268 
  417    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   362 
  453  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   172 
  457    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   402 
  489  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   136 
  493    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   438 
  525  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1   100 
  533    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   478 
  549  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1    76 
  557    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   502 
  593  C USDA034R_H04_BE445475Td08P035G03P004B061R1_018.ab1    32 
  601    USDA034F_H04_BE445475Td08P035G03P004B061F1_018.ab1   546 
Contig length: old 669, new 670

Contig length: old 670, new 670
New start: 0