No. words: 1258; after pruning: 1232


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 8.0 (1,1:583)  541  0.00 0.17 0.52  USDA034F_A05_BE445475Td09P035G03P004B061F1_047.ab1       12   585 (38)  C USDA034R_A05_BE445475Td09P035G03P004B061R1_047.ab1   (63)   572     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA034R_A05_BE445475Td09P035G03P004B061R1_047.ab1   635 
   95    USDA034F_A05_BE445475Td09P035G03P004B061F1_047.ab1    43 
  119  C USDA034R_A05_BE445475Td09P035G03P004B061R1_047.ab1   517 
  143    USDA034F_A05_BE445475Td09P035G03P004B061F1_047.ab1    91 
  147  C USDA034R_A05_BE445475Td09P035G03P004B061R1_047.ab1   489 
  471    USDA034F_A05_BE445475Td09P035G03P004B061F1_047.ab1   419 
  479  C USDA034R_A05_BE445475Td09P035G03P004B061R1_047.ab1   157 
  511    USDA034F_A05_BE445475Td09P035G03P004B061F1_047.ab1   459 
  519  C USDA034R_A05_BE445475Td09P035G03P004B061R1_047.ab1   117 
  591    USDA034F_A05_BE445475Td09P035G03P004B061F1_047.ab1   539 
  605  C USDA034R_A05_BE445475Td09P035G03P004B061R1_047.ab1    32 
  613    USDA034F_A05_BE445475Td09P035G03P004B061F1_047.ab1   561 
Contig length: old 674, new 675

Contig length: old 675, new 675
New start: 0