No. words: 1247; after pruning: 1221


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 9.4 (1,1:585)  548  0.00 0.17 0.35  USDA034F_B05_BE445475Td10P035G03P004B061F1_045.ab1       12   587 (37)  C USDA034R_B05_BE445475Td10P035G03P004B061R1_045.ab1   (48)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA034R_B05_BE445475Td10P035G03P004B061R1_045.ab1   623 
   89    USDA034F_B05_BE445475Td10P035G03P004B061F1_045.ab1    51 
  105  C USDA034R_B05_BE445475Td10P035G03P004B061R1_045.ab1   519 
  137    USDA034F_B05_BE445475Td10P035G03P004B061F1_045.ab1    99 
  145  C USDA034R_B05_BE445475Td10P035G03P004B061R1_045.ab1   479 
  197    USDA034F_B05_BE445475Td10P035G03P004B061F1_045.ab1   159 
  201  C USDA034R_B05_BE445475Td10P035G03P004B061R1_045.ab1   423 
  221    USDA034F_B05_BE445475Td10P035G03P004B061F1_045.ab1   183 
  237  C USDA034R_B05_BE445475Td10P035G03P004B061R1_045.ab1   387 
  257    USDA034F_B05_BE445475Td10P035G03P004B061F1_045.ab1   219 
  285  C USDA034R_B05_BE445475Td10P035G03P004B061R1_045.ab1   339 
  521    USDA034F_B05_BE445475Td10P035G03P004B061F1_045.ab1   483 
  525  C USDA034R_B05_BE445475Td10P035G03P004B061R1_045.ab1    99 
  541    USDA034F_B05_BE445475Td10P035G03P004B061F1_045.ab1   503 
  549  C USDA034R_B05_BE445475Td10P035G03P004B061R1_045.ab1    75 
  557    USDA034F_B05_BE445475Td10P035G03P004B061F1_045.ab1   519 
  561  C USDA034R_B05_BE445475Td10P035G03P004B061R1_045.ab1    63 
  581    USDA034F_B05_BE445475Td10P035G03P004B061F1_045.ab1   543 
Contig length: old 661, new 662

Contig length: old 662, new 662
New start: 0