No. words: 1686; after pruning: 1660


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.2 (1,1:731)  728  0.00 0.14 0.00  USDA011F_D10_BE445834Ld06P017F01P017F07F1_074.ab1        1   732 (86)  C USDA011R_D10_BE445834Ld06P017F01P017F07R1_074.ab1   (135)   733     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C USDA011R_D10_BE445834Ld06P017F01P017F07R1_074.ab1   868 
  167    USDA011F_D10_BE445834Ld06P017F01P017F07F1_074.ab1    31 
  227  C USDA011R_D10_BE445834Ld06P017F01P017F07R1_074.ab1   642 
  231    USDA011F_D10_BE445834Ld06P017F01P017F07F1_074.ab1    95 
  239  C USDA011R_D10_BE445834Ld06P017F01P017F07R1_074.ab1   630 
  247    USDA011F_D10_BE445834Ld06P017F01P017F07F1_074.ab1   111 
  251  C USDA011R_D10_BE445834Ld06P017F01P017F07R1_074.ab1   618 
  859    USDA011F_D10_BE445834Ld06P017F01P017F07F1_074.ab1   723 
Contig length: old 954, new 954

Contig length: old 954, new 954
New start: 0