No. words: 1804; after pruning: 1750


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.5 (1,1:1690)   98  2.68 0.89 0.00  USDA025F_C08_BE445834Ta11P043G12P017F071F1_060.ab1      769   880 (0)  C USDA025R_C08_BE445834Ta11P043G12P017F071R1_060.ab1   (0)   924   812 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1    USDA025F_C08_BE445834Ta11P043G12P017F071F1_060.ab1     1 
  772  C USDA025R_C08_BE445834Ta11P043G12P017F071R1_060.ab1   921 
  776    USDA025F_C08_BE445834Ta11P043G12P017F071F1_060.ab1   776 
  804  C USDA025R_C08_BE445834Ta11P043G12P017F071R1_060.ab1   889 
  808    USDA025F_C08_BE445834Ta11P043G12P017F071F1_060.ab1   808 
  816  C USDA025R_C08_BE445834Ta11P043G12P017F071R1_060.ab1   877 
  828    USDA025F_C08_BE445834Ta11P043G12P017F071F1_060.ab1   827 
  838  C USDA025R_C08_BE445834Ta11P043G12P017F071R1_060.ab1   855 
Contig length: old 1691, new 1692

Contig length: old 1692, new 1692
New start: 0 
S Change at: 594; seg lengths: entry 1, contig 1
S Change at: 1213; seg lengths: entry 1, contig 1