No. words: 1732; after pruning: 1692


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.0 (1,1:1705)   23  3.85 0.00 0.00  USDA025F_B09_BE445834Ta18P043G12P017F071F1_077.ab1      860   885 (0)  C USDA025R_B09_BE445834Ta18P043G12P017F071R1_077.ab1   (0)   847   822 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  12 nodes

 8 str. conn. components

Path
    1    USDA025F_B09_BE445834Ta18P043G12P017F071F1_077.ab1     1 
  863  C USDA025R_B09_BE445834Ta18P043G12P017F071R1_077.ab1   844 
Contig length: old 1706, new 1706

Contig length: old 1706, new 1706
New start: 0 
S Change at: 1227; seg lengths: entry 1, contig 1