No. words: 1750; after pruning: 1696


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 0.4 (1,1:1711)   36  0.00 0.00 0.00  USDA025F_C09_BE445834Ta19P043G12P017F071F1_075.ab1      873   909 (1)  C USDA025R_C09_BE445834Ta19P043G12P017F071R1_075.ab1   (0)   840   804 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  20 nodes

 12 str. conn. components

Path
    1    USDA025F_C09_BE445834Ta19P043G12P017F071F1_075.ab1     1 
  876  C USDA025R_C09_BE445834Ta19P043G12P017F071R1_075.ab1   837 
  880    USDA025F_C09_BE445834Ta19P043G12P017F071F1_075.ab1   880 
  884  C USDA025R_C09_BE445834Ta19P043G12P017F071R1_075.ab1   829 
  892    USDA025F_C09_BE445834Ta19P043G12P017F071F1_075.ab1   892 
  896  C USDA025R_C09_BE445834Ta19P043G12P017F071R1_075.ab1   817 
Contig length: old 1712, new 1712

Contig length: old 1712, new 1712
New start: 0 
S Change at: 1048; seg lengths: entry 1, contig 1
S Change at: 1226; seg lengths: entry 1, contig 1