No. words: 1824; after pruning: 1770


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.6 (1,1:1706)  105  3.42 0.00 0.00  USDA025F_G09_BE445834Ta23P043G12P017F071F1_067.ab1      781   897 (0)  C USDA025R_G09_BE445834Ta23P043G12P017F071R1_067.ab1   (0)   927   811 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1    USDA025F_G09_BE445834Ta23P043G12P017F071F1_067.ab1     1 
  793  C USDA025R_G09_BE445834Ta23P043G12P017F071R1_067.ab1   915 
  797    USDA025F_G09_BE445834Ta23P043G12P017F071F1_067.ab1   797 
  809  C USDA025R_G09_BE445834Ta23P043G12P017F071R1_067.ab1   899 
  821    USDA025F_G09_BE445834Ta23P043G12P017F071F1_067.ab1   821 
  829  C USDA025R_G09_BE445834Ta23P043G12P017F071R1_067.ab1   879 
  841    USDA025F_G09_BE445834Ta23P043G12P017F071F1_067.ab1   841 
  845  C USDA025R_G09_BE445834Ta23P043G12P017F071R1_067.ab1   863 
  859    USDA025F_G09_BE445834Ta23P043G12P017F071F1_067.ab1   859 
  863  C USDA025R_G09_BE445834Ta23P043G12P017F071R1_067.ab1   845 
Contig length: old 1707, new 1707

Contig length: old 1707, new 1707
New start: 0 
S Change at: 855; seg lengths: entry 1, contig 1
S Change at: 1226; seg lengths: entry 1, contig 1