No. words: 1685; after pruning: 1659


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.3 (1,1:1645)   33  5.13 0.00 0.00  USDA025F_C07_BE445834Td03P043G12P017F071F1_059.ab1      809   847 (0)  C USDA025R_C07_BE445834Td03P043G12P017F071R1_059.ab1   (0)   838   800 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  16 nodes

 10 str. conn. components

Path
    1    USDA025F_C07_BE445834Td03P043G12P017F071F1_059.ab1     1 
  816  C USDA025R_C07_BE445834Td03P043G12P017F071R1_059.ab1   831 
  820    USDA025F_C07_BE445834Td03P043G12P017F071F1_059.ab1   820 
  829  C USDA025R_C07_BE445834Td03P043G12P017F071R1_059.ab1   818 
Contig length: old 1646, new 1646

Contig length: old 1646, new 1646
New start: 0