No. words: 1865; after pruning: 1839


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.1 (1,1:1703)  156  0.62 0.00 0.00  USDA025F_D07_BE445834Td04P043G12P017F071F1_057.ab1      761   921 (0)  C USDA025R_D07_BE445834Td04P043G12P017F071R1_057.ab1   (0)   944   784 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    USDA025F_D07_BE445834Td04P043G12P017F071F1_057.ab1     1 
  804  C USDA025R_D07_BE445834Td04P043G12P017F071R1_057.ab1   901 
  808    USDA025F_D07_BE445834Td04P043G12P017F071F1_057.ab1   808 
  820  C USDA025R_D07_BE445834Td04P043G12P017F071R1_057.ab1   885 
  824    USDA025F_D07_BE445834Td04P043G12P017F071F1_057.ab1   824 
  840  C USDA025R_D07_BE445834Td04P043G12P017F071R1_057.ab1   865 
  844    USDA025F_D07_BE445834Td04P043G12P017F071F1_057.ab1   844 
  856  C USDA025R_D07_BE445834Td04P043G12P017F071R1_057.ab1   849 
  876    USDA025F_D07_BE445834Td04P043G12P017F071F1_057.ab1   876 
  880  C USDA025R_D07_BE445834Td04P043G12P017F071R1_057.ab1   825 
  888    USDA025F_D07_BE445834Td04P043G12P017F071F1_057.ab1   888 
  892  C USDA025R_D07_BE445834Td04P043G12P017F071R1_057.ab1   813 
  908    USDA025F_D07_BE445834Td04P043G12P017F071F1_057.ab1   908 
  912  C USDA025R_D07_BE445834Td04P043G12P017F071R1_057.ab1   793 
Contig length: old 1704, new 1704

Contig length: old 1704, new 1704
New start: 0