No. words: 1794; after pruning: 1754


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.5 (1,1:1680)  110  0.00 0.00 0.00  USDA025F_A08_BE445834Td09P043G12P017F071F1_064.ab1      735   847 (0)  C USDA025R_A08_BE445834Td09P043G12P017F071R1_064.ab1   (0)   947   835 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  58 nodes

 31 str. conn. components

Path
    1    USDA025F_A08_BE445834Td09P043G12P017F071F1_064.ab1     1 
  742  C USDA025R_A08_BE445834Td09P043G12P017F071R1_064.ab1   940 
  746    USDA025F_A08_BE445834Td09P043G12P017F071F1_064.ab1   746 
  754  C USDA025R_A08_BE445834Td09P043G12P017F071R1_064.ab1   928 
  766    USDA025F_A08_BE445834Td09P043G12P017F071F1_064.ab1   766 
  786  C USDA025R_A08_BE445834Td09P043G12P017F071R1_064.ab1   896 
  790    USDA025F_A08_BE445834Td09P043G12P017F071F1_064.ab1   790 
  802  C USDA025R_A08_BE445834Td09P043G12P017F071R1_064.ab1   880 
  806    USDA025F_A08_BE445834Td09P043G12P017F071F1_064.ab1   806 
  810  C USDA025R_A08_BE445834Td09P043G12P017F071R1_064.ab1   872 
  826    USDA025F_A08_BE445834Td09P043G12P017F071F1_064.ab1   826 
  830  C USDA025R_A08_BE445834Td09P043G12P017F071R1_064.ab1   852 
Contig length: old 1681, new 1681

Contig length: old 1681, new 1681
New start: 0 
S Change at: 962; seg lengths: entry 1, contig 1